Publications in collaboration with CSM Opto

Linda H. Kim, Taylor Chomiak, Michelle A. Tran, Stephanie Tam, Claire McPherson, Shane E. A. Eaton, Young Ou, Zelma H. T. Kiss, Patrick J. Whelan

Substantia nigra degradation results in widespread changes in medial zona incerta afferent and efferent connectomics

bioRxiv 2021.09.01.458438; doi:


Taylor Chomiak, Neilen P. Rasiah, Leonardo A. Molina, Bin Hu, Jaideep S. Bains & Tamás Füzesi

A versatile computational algorithm for time-series data analysis and machine-learning models

npj Parkinsons Dis. 7, 97 (2021).


Fiker, R., Kim, L.H., Molina, L.A., Chomiak, T. and Whelan, P.J.

Visual Gait Lab: A user-friendly approach to gait analysis

Journal of Neuroscience Methods (2020): 108775.


Benthem, S.D., Skelin, I., Moseley, S., Dixon, J., Melilli, A., Molina, L., McNaughton, B. and Wilber, A.

Impaired Hippocampal-cortical interactions during sleep and memory reactivation without consolidation in a mouse model of Alzheimer's disease

Current Biology (2020)


Daviu, N., Füzesi, T., Rosenegger, D.G., Rasiah, N.P., Sterley, T.L., Peringod, G. and Bains, J.S.

Paraventricular nucleus CRH neurons encode stress controllability and regulate defensive behavior selection

Nature Neuroscience 23.3 (2020): 398-410.


Mao, D., Molina, L.A., Bonin, V. and McNaughton, B.L.

Vision and Locomotion Combine to Drive Path Integration Sequences in Mouse Retrosplenial Cortex

Current Biology (2020).


Mayr, K.A., Young, L., Molina, L.A., Tran, M.A. and Whelan, P.J.

An economical solution to record and control wheel-running for group-housed mice

Journal of neuroscience methods 331 (2020): 108482.


Chomiak T

Recurrence Quantification Analysis Statistics for Image Feature Extraction and Classification

Recurrence quantification analysis statistics for image feature extraction and classification. Data-Enabled Discov. Appl. 4, 2, pp1-9 (2020).


Molina, L.A., Ivan, V.E., Gruber, A.J. and Luczak, A.

Using Neuron Spiking Activity to Trigger Closed-Loop Stimuli in Neurophysiological Experiments

JoVE (Journal of Visualized Experiments) 153 (2019): e59812.


Füzesi, T., Rosenegger, D., Daviu, N., Chomiak T, Molina, L.A., Rasiah, N.P., Bains, J.S.

Fear and Anxiety in the Hypothalamus

Program No. 320.08. 2019 Neuroscience Meeting Planner. Chicago, IL: Society for Neuroscience, Online.


Huang, J., Gadotti, V.M., Chen, L., Souza, I.A., Huang, S., Wang, D., Ramakrishnan, C., Deisseroth, K., Zhang, Z. and Zamponi, G.W.

A neuronal circuit for activating descending modulation of neuropathic pain

Nature neuroscience (2019): 1-10.


Sterley, T.L., Baimoukhametova, D., Füzesi, T., Zurek, A.A., Daviu, N., Rasiah, N.P., Rosenegger, D. and Bains, J.S.

Social transmission and buffering of synaptic changes after stress

Nature neuroscience 21.3 (2018): 393-403.


Andonegui, G., Zelinski, E.L., Schubert, C.L., Knight, D., Craig, L.A., Winston, B.W., Spanswick, S.C., Petri, B., Jenne, C.N., Sutherland, J.C. and Nguyen, R.

Targeting inflammatory monocytes in sepsis-associated encephalopathy and long-term cognitive impairment

JCI insight 3.9 (2018).


Lim, E.M.F., Nakanishi, S.T., Hoghooghi, V., Eaton, S.E., Palmer, A.L., Frederick, A., Stratton, J.A., Stykel, M.G., Whelan, P.J., Zochodne, D.W. and Biernaskie, J.

AlphaB-crystallin regulates remyelination after peripheral nerve injury

Proceedings of the National Academy of Sciences 114.9 (2017): E1707-E1716.


Füzesi, T., Daviu, N., Cusulin, J.I.W., Bonin, R.P. and Bains, J.S.

Hypothalamic CRH neurons orchestrate complex behaviours after stress

Nature communications 7 (2016): 11937.


Farrell, J.S., Gaxiola-Valdez, I., Wolff, M.D., David, L.S., Dika, H.I., Geeraert, B.L., Wang, X.R., Singh, S., Spanswick, S.C., Dunn, J.F. and Antle, M.C.

Postictal behavioural impairments are due to a severe prolonged hypoperfusion/hypoxia event that is COX-2 dependent

Elife 5 (2016): e19352.